PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093938.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 265aa    MW: 30533 Da    PI: 7.888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093938.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.92.6e-46171481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratksgyWkatgkdke 91 
                     lppGfrF+Ptdeelv +yL++k+ + +    + +++i+e++++k++PwdLp+  +  e+e y+Fs+++ ky++g+ ++nr+t+sgyWk+tg+dk+
  XP_010093938.1  17 LPPGFRFQPTDEELVFQYLRRKIFSCPmpsSSDHHIIPEINVCKYDPWDLPS-GDIVEQERYYFSNKEAKYRNGSnKANRKTNSGYWKSTGSDKK 110
                     79**********************999543233347***************3.34467899***********97637899*************** PP

             NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++s+  ++ vg++ktLvfy+g+ p+g++tdW+mhey+l
  XP_010093938.1 111 IVSStMKHIVGTRKTLVFYRGKPPHGSRTDWFMHEYSL 148
                     **9866778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-497184IPR003441NAC domain
PROSITE profilePS5100550.58217184IPR003441NAC domain
PfamPF023657.0E-2518148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDKYFNFVRN NNGVIKLPPG FRFQPTDEEL VFQYLRRKIF SCPMPSSSDH HIIPEINVCK  60
YDPWDLPSGD IVEQERYYFS NKEAKYRNGS NKANRKTNSG YWKSTGSDKK IVSSTMKHIV  120
GTRKTLVFYR GKPPHGSRTD WFMHEYSLNI VDVEDDQTNS GNNFPQISQS QTENNWVLCR  180
IFLKERSSSS TNNNINNIDE IQQNWKDNKM RRSVGINDCQ PYKLYDLVMG CEIDTSPMLP  240
LSSSSSSNSS YVTEDHEVSS SGGMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-401518818172NAC domain-containing protein 19
3swm_B4e-401518818172NAC domain-containing protein 19
3swm_C4e-401518818172NAC domain-containing protein 19
3swm_D4e-401518818172NAC domain-containing protein 19
3swp_A4e-401518818172NAC domain-containing protein 19
3swp_B4e-401518818172NAC domain-containing protein 19
3swp_C4e-401518818172NAC domain-containing protein 19
3swp_D4e-401518818172NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093938.10.0NAC domain-containing protein 29
SwissprotQ9FY932e-66NAC83_ARATH; NAC domain-containing protein 83
TrEMBLW9R2Y40.0W9R2Y4_9R
STRINGGLYMA18G53954.18e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-66NAC domain containing protein 83